PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000052.1_g00007.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 175aa    MW: 19839.8 Da    PI: 10.6189
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000052.1_g00007.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.83.7e-203282255
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             +y+GVr ++ +g+++AeIrd + ng  +r++lg+f+taeeAa a+++a+++ +g
  Itr_sc000052.1_g00007.1 32 RYRGVRKRP-WGKYAAEIRDSTRNG--TRVWLGTFDTAEEAALAYDQAALSTRG 82
                             8********.**********44465..**********************99887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.52E-283190No hitNo description
Gene3DG3DSA:3.30.730.101.7E-313291IPR001471AP2/ERF domain
PfamPF008475.3E-143282IPR001471AP2/ERF domain
PROSITE profilePS5103223.4593290IPR001471AP2/ERF domain
SuperFamilySSF541713.73E-233291IPR016177DNA-binding domain
SMARTSM003805.8E-373296IPR001471AP2/ERF domain
PRINTSPR003678.8E-123344IPR001471AP2/ERF domain
PRINTSPR003678.8E-125672IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MRLKPLARSA MEFSSPTPRL TSSDDKLRDE KRYRGVRKRP WGKYAAEIRD STRNGTRVWL  60
GTFDTAEEAA LAYDQAALST RGKSALLNFP TEKVQESLDN MKYWCEEGSS PVATLKATNK  120
MKMRRRKLQK RKKKKKKKNK KVMNGDDESG SVLVFEDLGA ELLEELLTSS SMAAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-283190160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A7e-283190463ATERF1
3gcc_A7e-283190463ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1121132KMRRRKLQKRKK
2123137RRRKLQKRKKKKKKK
3125137RKLQKRKKKKKKK
4127135LQKRKKKKK
5131137KKKKKKK
6131140KKKKKKKNKK
7132140KKKKKKNKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015072958.11e-58PREDICTED: ethylene-responsive transcription factor 1B-like
SwissprotQ8LDC86e-53ERF92_ARATH; Ethylene-responsive transcription factor 1B
TrEMBLM1C6B72e-54M1C6B7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000607325e-54(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.17e-33ethylene response factor 1